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$ showsimg
Available Images:
afni-22.2.12.sif megahit-1.2.9.sif
alphafold.sif metaphage.sif
aspect.sif metaphage-v2.sif
aspect-tester.sif neo4j_4.4.27-community.sif
beast-1.10.4.sif nfcore-eager-2.4.7.sif
carla-0.9.15.sif nfcore-eager-2.5.0.sif
carla_latest.sif nvhpl.sif
centos-6.sif parabricks-4.0.sif
centos-7.9.sif pecube-d.sif
centos-8.sif persvade_v1.02.6.sif
clara-parabricks_4.1.0-1.sif polysolver.sif
debian-11.3.sif polysolver-singularity_v4.sif
deepvariant_1.5.0-gpu.sif python
deepvariant_1.5.0.sif qe-7.1.sif
ensembl-vep-108.2.sif qsiprep.sif
ensembl-vep.sif rhel-8.sif
flexbar-3.5.0.sif rhel-9.sif
fmriprep.sif spy
gamess_17.09.sif spython.sif
gemBS stablediffusion_automatic1111.sif
gemBS.sif tensorflow_latest-gpu.sif
google_colab.sif ubuntu-22.04.sif
gromacs_2022.3.sif vep.sif
irods-icommands.sif yade-2023.02a.sif
llm.sif
Syntax: $ SIMG=ubuntu-22.04 classic-interactive
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Step 2: Launch the Apptainer Container and Enter a Terminal Prompt
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SIMG=ubuntu-22.04 classic-interactive |
Of course, depending on the application you are interested in, you will want to change the image and interactive parameters to suit your workflow, for example:
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$ SIMG=fmriprep.sif classic-interactive -c 4
$ SIMG=tensorflow_latest-gpu.sif classic-interactive --gres=gpu:a100:4 |
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$ SIMG=fmriprep.sif classic-interactive
Waiting for JOBID 9899771 to start
Apptainer> ls
.bashrc .bash_profile .bash_history myscript.sh
Apptainer> fmriprep --help
... omitted extra lines ...
fMRIPrep: fMRI PREProcessing workflows v21.0.3
Apptainer> whoami
wdizon
Apptainer> ls /scratch/wdizon/
letsbuildwrf/ wrf_compiles/
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For additional examples of using Apptainer containers:
Parabricks
Gromacs
GAMESS 17
Additional Help
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| nopanel | true |
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