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This example is about installing and using two Python packages multiqc and pytorch.

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The “conda install” on the above page gives the installation commands:

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The conda part in the red circle needs to be changed to mamba, and the bioconda part in the blue box is the channel name of this multiqc package. Channel is similar to the name of an online folder, that mamba can find and download the correct package. This is important for the next step.

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  1. Connect to the VPN

  2. Open a command line interface on Sol by navigating to sol.asu.edu on your browser and
    selecting the "Sol Shell Access" option from the "System" menu option. Or by SSHing into
    Sol using the command ssh <asurite>@sol.asu.edu

  3. interactive -p htc -c 4 -t 30

  4. module load mamba/latest

  5. module load cuda-12.4.1-gcc-12.1.0

  6. Here we combine three things into a single command:

    1. Create an environment

    2. Install Pytorch using the command found in step 1

    3. Install Multiqc using the command found in step 1

      Code Block
      mamba create -n myENV -c conda-forge -c pytorch -c nvidia -c bioconda python=3 multiqc pytorch torchvision torchaudio pytorch-cuda=12.4

  7. And answer Y to the promoted question, if everything looks fine

  8. Wait till the installation finish

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